source/View/Controller/StudyController.php line 435

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  1. <?php
  3. namespace App\View\Controller;
  5. use App\Crud\Crudable;
  6. use App\Domain\Model\Study\CreatorMetaDataGroup;
  7. use App\Domain\Model\Study\Experiment;
  8. use App\Questionnaire\Questionnairable;
  9. use Doctrine\ORM\EntityManagerInterface;
  10. use Psr\Log\LoggerInterface;
  11. use Sensio\Bundle\FrameworkExtraBundle\Configuration\IsGranted;
  12. use Symfony\Bundle\FrameworkBundle\Controller\AbstractController;
  13. use Symfony\Component\HttpFoundation\Request;
  14. use Symfony\Component\HttpFoundation\Response;
  15. use Symfony\Component\Routing\Annotation\Route;
  16. use Symfony\Component\Security\Core\Security;
  17. use Symfony\Component\HttpFoundation\JsonResponse;
  19. /**
  20.  * @Route("/studies", name="Study-")
  21.  * @IsGranted("ROLE_USER")
  22.  *
  23.  * Class StudyController
  24.  * @package App\View\Controller
  25.  */
  26. class StudyController extends AbstractController
  27. {
  28.     private Security $security;
  29.     private Questionnairable $questionnaire;
  30.     private EntityManagerInterface $em;
  31.     private LoggerInterface $logger;
  32.     private Crudable $crud;
  34.     /**
  35.      * @param Security $security
  36.      * @param Questionnairable $questionnaire
  37.      * @param EntityManagerInterface $em
  38.      * @param LoggerInterface $logger
  39.      * @param Crudable $crud
  40.      */
  41.     public function __construct(Security $security, Questionnairable $questionnaire, EntityManagerInterface $em, LoggerInterface $logger, Crudable $crud)
  42.     {
  43.         $this->security = $security;
  44.         $this->questionnaire = $questionnaire;
  45.         $this->em = $em;
  46.         $this->logger = $logger;
  47.         $this->crud = $crud;
  48.     }
  51.     /**
  52.      * @Route("/", name="overview")
  53.      *
  54.      * @return Response
  55.      */
  56.     public function overviewAction(): Response
  57.     {
  58.         $this->logger->debug("Enter StudyController::overviewAction");
  60.         return $this->render('Pages/Study/overview.html.twig', [
  61.             'all_experiments' => $this->em->getRepository(Experiment::class)->findAll(),
  62.         ]);
  63.     }
  65.     /**
  66.      * @Route("/new", name="new")
  67.      *
  68.      * @param Questionnairable $questionnaire
  69.      * @param Crudable $crud
  70.      * @param Request $request
  71.      * @return Response
  72.      */
  73.     public function newAction(Questionnairable $questionnaire, Crudable $crud, Request $request): Response
  74.     {
  75.         $this->logger->debug("Enter StudyController::newAction");
  76.         $newExperiment = Experiment::createNewExperiment($this->security->getUser());
  77.         $form = $questionnaire->askAndHandle($newExperiment->getSettingsMetaDataGroup(), 'create', $request);
  79.         if ($this->questionnaire->isSubmittedAndValid($form)) {
  80.             $this->em->persist($newExperiment);
  81.             $this->em->flush();
  83.             return $this->redirectToRoute('Study-introduction', ['uuid' => $newExperiment->getId()]);
  84.         }
  86.         return $this->render('Pages/Study/new.html.twig', [
  87.             'form' => $form->createView(),
  88.             'experiment' => $newExperiment,
  89.         ]);
  90.     }
  92.     /**
  93.      * @Route("/{uuid}/settings", name="settings")
  94.      *
  95.      * @param string $uuid
  96.      * @param Request $request
  97.      * @return Response
  98.      */
  99.     public function settingsAction(string $uuid, Request $request): Response
  100.     {
  101.         $this->logger->debug("Enter StudyController::settingsAction with [UUID: $uuid]");
  102.         $entityAtChange = $this->getEntityAtChange($uuid);
  103.         $form = $this->questionnaire->askAndHandle($entityAtChange->getSettingsMetaDataGroup(), 'save', $request);
  105.         if ($this->questionnaire->isSubmittedAndValid($form)) {
  106.             $this->em->persist($entityAtChange);
  107.             $this->em->flush();
  108.         }
  110.         return $this->render('Pages/Study/settings.html.twig', [
  111.             'form' => $form->createView(),
  112.             'experiment' => $entityAtChange,
  113.         ]);
  114.     }
  116.     /**
  117.      * @Route("/{uuid}/documentation", name="documentation")
  118.      *
  119.      * @param string $uuid
  120.      * @param Request $request
  121.      * @return Response
  122.      */
  123.     public function documentationAction(string $uuid, Request $request): Response
  124.     {
  125.         $this->logger->debug("Enter StudyController::documentationAction with [UUID: $uuid]");
  126.         $entityAtChange = $this->getEntityAtChange($uuid);
  127.         $basicInformation = $entityAtChange->getBasicInformationMetaDataGroup();
  128.         if (sizeof($basicInformation->getCreators()) == 0) {
  129.             $basicInformation->getCreators()->add(new CreatorMetaDataGroup());
  130.         }
  131.         $basicInformation->setRelatedPublications($this->prepareEmptyArray($basicInformation->getRelatedPublications()));
  132.         $form = $this->questionnaire->askAndHandle($basicInformation, 'save', $request);
  133.         if ($this->questionnaire->isSubmittedAndValid($form)) {
  134.             $formData = $form->getData();
  135.             $currentCreators = $this->em->getRepository(CreatorMetaDataGroup::class)->findBy(['basicInformation' => $basicInformation]);
  136.             if (is_iterable($currentCreators)) {
  137.                 foreach ($currentCreators as $currentCreator) {
  138.                     $this->em->remove($currentCreator);
  139.                 }
  140.             }
  141.             if ($form->getData()->getCreators() !== null && is_iterable($form->getData()->getCreators())) {
  142.                 foreach ($formData->getCreators() as $creator) {
  143.                     if (!$creator->isEmpty()) {
  144.                         $creator->setCreditRoles(array_values(array_unique($creator->getCreditRoles())));
  145.                         $creator->setBasicInformation($basicInformation);
  146.                         $this->em->persist($creator);
  147.                     } else {
  148.                         $form->getData()->getCreators()->removeElement($creator);
  149.                     }
  150.                 }
  151.             }
  152.             $formData->setRelatedPublications(array_filter($formData->getRelatedPublications()));
  153.             $this->em->persist($formData);
  154.             $this->em->flush();
  156.             switch (true) {
  157.                 case $form->get('saveAndNext')->isClicked():
  158.                     return $this->redirectToRoute('Study-theory', ['uuid' => $uuid]);
  159.                 case $form->get('saveAndIntroduction')->isClicked():
  160.                     return $this->redirectToRoute('Study-introduction', ['uuid' => $uuid]);
  161.                 case $form->get('saveAndDocumentation')->isClicked():
  162.                     return $this->redirectToRoute('Study-documentation', ['uuid' => $uuid]);
  163.                 case $form->get('saveAndTheory')->isClicked():
  164.                     return $this->redirectToRoute('Study-theory', ['uuid' => $uuid]);
  165.                 case $form->get('saveAndMethod')->isClicked():
  166.                     return $this->redirectToRoute('Study-method', ['uuid' => $uuid]);
  167.                 case $form->get('saveAndMeasure')->isClicked():
  168.                     return $this->redirectToRoute('Study-measure', ['uuid' => $uuid]);
  169.                 case $form->get('saveAndSample')->isClicked():
  170.                     return $this->redirectToRoute('Study-sample', ['uuid' => $uuid]);
  171.                 case $form->get('saveAndDatasets')->isClicked():
  172.                     return $this->redirectToRoute('Study-datasets', ['uuid' => $uuid]);
  173.                 case $form->get('saveAndMaterials')->isClicked():
  174.                     return $this->redirectToRoute('Study-materials', ['uuid' => $uuid]);
  175.                 case $form->get('saveAndReview')->isClicked():
  176.                     return $this->redirectToRoute('Study-review', ['uuid' => $uuid]);
  177.                 case $form->get('saveAndExport')->isClicked():
  178.                     return $this->redirectToRoute('export_index', ['uuid' => $uuid]);
  179.                 case $form->get('saveAndSettings')->isClicked():
  180.                     return $this->redirectToRoute('Study-settings', ['uuid' => $uuid]);
  181.             }
  183.             return $this->redirectToRoute('Study-documentation', ['uuid' => $uuid]);
  184.         }
  186.         return $this->render('Pages/Study/documentation.html.twig', [
  187.             'form' => $form->createView(),
  188.             'experiment' => $entityAtChange,
  189.         ]);
  190.     }
  192.     /**
  193.      * @Route("/{uuid}/theory", name="theory")
  194.      *
  195.      * @param string $uuid
  196.      * @param Request $request
  197.      * @return Response
  198.      */
  199.     public function theoryAction(string $uuid, Request $request): Response
  200.     {
  201.         $this->logger->debug("Enter StudyController::theoryAction with [UUID: $uuid]");
  202.         $entityAtChange = $this->getEntityAtChange($uuid);
  203.         $form = $this->questionnaire->askAndHandle($entityAtChange->getTheoryMetaDataGroup(), 'save', $request);
  205.         if ($this->questionnaire->isSubmittedAndValid($form)) {
  206.             $this->em->persist($entityAtChange);
  207.             $this->em->flush();
  209.             switch (true) {
  210.                 case $form->get('saveAndPrevious')->isClicked():
  211.                     return $this->redirectToRoute('Study-documentation', ['uuid' => $uuid]);
  212.                 case $form->get('saveAndNext')->isClicked():
  213.                     return $this->redirectToRoute('Study-method', ['uuid' => $uuid]);
  214.                 case $form->get('saveAndIntroduction')->isClicked():
  215.                     return $this->redirectToRoute('Study-introduction', ['uuid' => $uuid]);
  216.                 case $form->get('saveAndDocumentation')->isClicked():
  217.                     return $this->redirectToRoute('Study-documentation', ['uuid' => $uuid]);
  218.                 case $form->get('saveAndTheory')->isClicked():
  219.                     return $this->redirectToRoute('Study-theory', ['uuid' => $uuid]);
  220.                 case $form->get('saveAndMethod')->isClicked():
  221.                     return $this->redirectToRoute('Study-method', ['uuid' => $uuid]);
  222.                 case $form->get('saveAndMeasure')->isClicked():
  223.                     return $this->redirectToRoute('Study-measure', ['uuid' => $uuid]);
  224.                 case $form->get('saveAndSample')->isClicked():
  225.                     return $this->redirectToRoute('Study-sample', ['uuid' => $uuid]);
  226.                 case $form->get('saveAndDatasets')->isClicked():
  227.                     return $this->redirectToRoute('Study-datasets', ['uuid' => $uuid]);
  228.                 case $form->get('saveAndMaterials')->isClicked():
  229.                     return $this->redirectToRoute('Study-materials', ['uuid' => $uuid]);
  230.                 case $form->get('saveAndReview')->isClicked():
  231.                     return $this->redirectToRoute('Study-review', ['uuid' => $uuid]);
  232.                 case $form->get('saveAndExport')->isClicked():
  233.                     return $this->redirectToRoute('export_index', ['uuid' => $uuid]);
  234.                 case $form->get('saveAndSettings')->isClicked():
  235.                     return $this->redirectToRoute('Study-settings', ['uuid' => $uuid]);
  236.             }
  237.         }
  239.         return $this->render('Pages/Study/theory.html.twig', [
  240.             'form' => $form->createView(),
  241.             'experiment' => $entityAtChange,
  242.         ]);
  243.     }
  245.     /**
  246.      * @Route("/{uuid}/sample", name="sample")
  247.      *
  248.      * @param string $uuid
  249.      * @param Request $request
  250.      * @return Response
  251.      */
  252.     public function sampleAction(string $uuid, Request $request): Response
  253.     {
  254.         $this->logger->debug("Enter StudyController::sampleAction with [UUID: $uuid]");
  255.         $entityAtChange = $this->getEntityAtChange($uuid);
  256.         $sampleGroup = $entityAtChange->getSampleMetaDataGroup();
  257.         $sampleGroup->setPopulation($this->prepareEmptyArray($sampleGroup->getPopulation()));
  258.         $sampleGroup->setInclusionCriteria($this->prepareEmptyArray($sampleGroup->getInclusionCriteria()));
  259.         $sampleGroup->setExclusionCriteria($this->prepareEmptyArray($sampleGroup->getExclusionCriteria()));
  260.         $form = $this->questionnaire->askAndHandle($entityAtChange->getSampleMetaDataGroup(), 'save', $request);
  261.         if ($this->questionnaire->isSubmittedAndValid($form)) {
  262.             $formData = $form->getData();
  263.             $formData->setPopulation(array_values($formData->getPopulation()));
  264.             $formData->setInclusionCriteria(array_values($formData->getInclusionCriteria()));
  265.             $formData->setExclusionCriteria(array_values($formData->getExclusionCriteria()));
  266.             $this->em->persist($formData);
  267.             $this->em->flush();
  269.             switch (true) {
  270.                 case $form->get('saveAndPrevious')->isClicked():
  271.                     return $this->redirectToRoute('Study-measure', ['uuid' => $uuid]);
  272.                 case $form->get('saveAndIntroduction')->isClicked():
  273.                     return $this->redirectToRoute('Study-introduction', ['uuid' => $uuid]);
  274.                 case $form->get('saveAndDocumentation')->isClicked():
  275.                     return $this->redirectToRoute('Study-documentation', ['uuid' => $uuid]);
  276.                 case $form->get('saveAndTheory')->isClicked():
  277.                     return $this->redirectToRoute('Study-theory', ['uuid' => $uuid]);
  278.                 case $form->get('saveAndMethod')->isClicked():
  279.                     return $this->redirectToRoute('Study-method', ['uuid' => $uuid]);
  280.                 case $form->get('saveAndMeasure')->isClicked():
  281.                     return $this->redirectToRoute('Study-measure', ['uuid' => $uuid]);
  282.                 case $form->get('saveAndSample')->isClicked():
  283.                     return $this->redirectToRoute('Study-sample', ['uuid' => $uuid]);
  284.                 case $form->get('saveAndDatasets')->isClicked():
  285.                     return $this->redirectToRoute('Study-datasets', ['uuid' => $uuid]);
  286.                 case $form->get('saveAndMaterials')->isClicked():
  287.                     return $this->redirectToRoute('Study-materials', ['uuid' => $uuid]);
  288.                 case $form->get('saveAndReview')->isClicked():
  289.                     return $this->redirectToRoute('Study-review', ['uuid' => $uuid]);
  290.                 case $form->get('saveAndExport')->isClicked():
  291.                     return $this->redirectToRoute('export_index', ['uuid' => $uuid]);
  292.                 case $form->get('saveAndSettings')->isClicked():
  293.                     return $this->redirectToRoute('Study-settings', ['uuid' => $uuid]);
  294.             }
  295.         }
  297.         return $this->render('Pages/Study/sample.html.twig', [
  298.             'form' => $form->createView(),
  299.             'experiment' => $entityAtChange,
  300.         ]);
  301.     }
  303.     /**
  304.      * @Route("/{uuid}/measure", name="measure")
  305.      *
  306.      * @param string $uuid
  307.      * @param Request $request
  308.      * @return Response
  309.      */
  310.     public function measureAction(string $uuid, Request $request): Response
  311.     {
  312.         $this->logger->debug("Enter StudyController::measureAction with [UUID: $uuid]");
  313.         $entityAtChange = $this->getEntityAtChange($uuid);
  314.         $entityAtChange->getMeasureMetaDataGroup()->setMeasures($this->prepareEmptyArray($entityAtChange->getMeasureMetaDataGroup()->getMeasures()));
  315.         $entityAtChange->getMeasureMetaDataGroup()->setApparatus($this->prepareEmptyArray($entityAtChange->getMeasureMetaDataGroup()->getApparatus()));
  316.         $form = $this->questionnaire->askAndHandle($entityAtChange->getMeasureMetaDataGroup(), 'save', $request);
  317.         if ($this->questionnaire->isSubmittedAndValid($form)) {
  318.             $formData = $form->getData();
  319.             $formData->setApparatus(array_filter($formData->getApparatus()));
  320.             $formData->setMeasures(array_filter($formData->getMeasures()));
  321.             $this->em->persist($formData);
  322.             $this->em->flush();
  324.             switch (true) {
  325.                 case $form->get('saveAndPrevious')->isClicked():
  326.                     return $this->redirectToRoute('Study-method', ['uuid' => $uuid]);
  327.                 case $form->get('saveAndNext')->isClicked():
  328.                     return $this->redirectToRoute('Study-sample', ['uuid' => $uuid]);
  329.                 case $form->get('saveAndIntroduction')->isClicked():
  330.                     return $this->redirectToRoute('Study-introduction', ['uuid' => $uuid]);
  331.                 case $form->get('saveAndDocumentation')->isClicked():
  332.                     return $this->redirectToRoute('Study-documentation', ['uuid' => $uuid]);
  333.                 case $form->get('saveAndTheory')->isClicked():
  334.                     return $this->redirectToRoute('Study-theory', ['uuid' => $uuid]);
  335.                 case $form->get('saveAndMethod')->isClicked():
  336.                     return $this->redirectToRoute('Study-method', ['uuid' => $uuid]);
  337.                 case $form->get('saveAndMeasure')->isClicked():
  338.                     return $this->redirectToRoute('Study-measure', ['uuid' => $uuid]);
  339.                 case $form->get('saveAndSample')->isClicked():
  340.                     return $this->redirectToRoute('Study-sample', ['uuid' => $uuid]);
  341.                 case $form->get('saveAndDatasets')->isClicked():
  342.                     return $this->redirectToRoute('Study-datasets', ['uuid' => $uuid]);
  343.                 case $form->get('saveAndMaterials')->isClicked():
  344.                     return $this->redirectToRoute('Study-materials', ['uuid' => $uuid]);
  345.                 case $form->get('saveAndReview')->isClicked():
  346.                     return $this->redirectToRoute('Study-review', ['uuid' => $uuid]);
  347.                 case $form->get('saveAndExport')->isClicked():
  348.                     return $this->redirectToRoute('export_index', ['uuid' => $uuid]);
  349.                 case $form->get('saveAndSettings')->isClicked():
  350.                     return $this->redirectToRoute('Study-settings', ['uuid' => $uuid]);
  351.             }
  352.         }
  354.         return $this->render('Pages/Study/measure.html.twig', [
  355.             'form' => $form->createView(),
  356.             'experiment' => $entityAtChange,
  357.         ]);
  358.     }
  360.     /**
  361.      * @Route("/{uuid}/method", name="method")
  362.      *
  363.      * @param string $uuid
  364.      * @param Request $request
  365.      * @return Response
  366.      */
  367.     public function methodAction(string $uuid, Request $request): Response
  368.     {
  369.         $this->logger->debug("Enter StudyController::methodAction with [UUID: $uuid]");
  370.         $entityAtChange = $this->getEntityAtChange($uuid);
  371.         $form = $this->questionnaire->askAndHandle($entityAtChange->getMethodMetaDataGroup(), 'save', $request);
  373.         if ($this->questionnaire->isSubmittedAndValid($form)) {
  374.             $this->em->persist($entityAtChange);
  375.             $this->em->flush();
  377.             switch (true) {
  378.                 case $form->get('saveAndPrevious')->isClicked():
  379.                     return $this->redirectToRoute('Study-theory', ['uuid' => $uuid]);
  380.                 case $form->get('saveAndNext')->isClicked():
  381.                     return $this->redirectToRoute('Study-measure', ['uuid' => $uuid]);
  382.                 case $form->get('saveAndIntroduction')->isClicked():
  383.                     return $this->redirectToRoute('Study-introduction', ['uuid' => $uuid]);
  384.                 case $form->get('saveAndDocumentation')->isClicked():
  385.                     return $this->redirectToRoute('Study-documentation', ['uuid' => $uuid]);
  386.                 case $form->get('saveAndTheory')->isClicked():
  387.                     return $this->redirectToRoute('Study-theory', ['uuid' => $uuid]);
  388.                 case $form->get('saveAndMethod')->isClicked():
  389.                     return $this->redirectToRoute('Study-method', ['uuid' => $uuid]);
  390.                 case $form->get('saveAndMeasure')->isClicked():
  391.                     return $this->redirectToRoute('Study-measure', ['uuid' => $uuid]);
  392.                 case $form->get('saveAndSample')->isClicked():
  393.                     return $this->redirectToRoute('Study-sample', ['uuid' => $uuid]);
  394.                 case $form->get('saveAndDatasets')->isClicked():
  395.                     return $this->redirectToRoute('Study-datasets', ['uuid' => $uuid]);
  396.                 case $form->get('saveAndMaterials')->isClicked():
  397.                     return $this->redirectToRoute('Study-materials', ['uuid' => $uuid]);
  398.                 case $form->get('saveAndReview')->isClicked():
  399.                     return $this->redirectToRoute('Study-review', ['uuid' => $uuid]);
  400.                 case $form->get('saveAndExport')->isClicked():
  401.                     return $this->redirectToRoute('export_index', ['uuid' => $uuid]);
  402.                 case $form->get('saveAndSettings')->isClicked():
  403.                     return $this->redirectToRoute('Study-settings', ['uuid' => $uuid]);
  404.             }
  405.         }
  407.         return $this->render('Pages/Study/method.html.twig', [
  408.             'form' => $form->createView(),
  409.             'experiment' => $entityAtChange,
  410.         ]);
  411.     }
  413.     /**
  414.      * @Route("/{uuid}/materials", name="materials")
  415.      *
  416.      * @param string $uuid
  417.      * @return Response
  418.      */
  419.     public function materialsAction(string $uuid): Response
  420.     {
  421.         $this->logger->debug("Enter StudyController::materialsAction with [UUID: $uuid]");
  422.         $entityAtChange = $this->getEntityAtChange($uuid);
  424.         return $this->render('Pages/Study/materials.html.twig', [
  425.             'experiment' => $entityAtChange,
  426.         ]);
  427.     }
  429.     /**
  430.      * @Route("/{uuid}/datasets", name="datasets")
  431.      *
  432.      * @param string $uuid
  433.      * @return Response
  434.      */
  435.     public function datasetsAction(string $uuid): Response
  436.     {
  437.         $this->logger->debug("Enter StudyController::datasetsAction with [UUID: $uuid]");
  438.         $entityAtChange = $this->getEntityAtChange($uuid);
  440.         return $this->render('Pages/Study/datasets.html.twig', [
  441.             'experiment' => $entityAtChange,
  442.         ]);
  443.     }
  445.     /**
  446.      * @Route("/{uuid}/introduction", name="introduction")
  447.      *
  448.      * @param string $uuid
  449.      * @return Response
  450.      */
  451.     public function introductionAction(string $uuid): Response
  452.     {
  453.         $this->logger->debug("Enter StudyController::introductionAction with [UUID: $uuid]");
  454.         $entityAtChange = $this->getEntityAtChange($uuid);
  456.         return $this->render('Pages/Study/introduction.html.twig', [
  457.             'experiment' => $entityAtChange,
  458.         ]);
  459.     }
  461.     /**
  462.      * @Route("/{uuid}/delete", name="delete")
  463.      *
  464.      * @param string $uuid
  465.      * @return Response
  466.      */
  467.     public function deleteAction(string $uuid): Response
  468.     {
  469.         $this->logger->debug("Enter StudyController::deleteAction with [UUID: $uuid]");
  470.         $entityAtChange = $this->getEntityAtChange($uuid);
  471.         $result = $this->crud->deleteStudy($entityAtChange);
  473.         return $this->redirectToRoute('Study-overview');
  474.     }
  477.     protected function getEntityAtChange(string $uuid, string $className = Experiment::class)
  478.     {
  479.         return $this->em->getRepository($className)->find($uuid);
  480.     }
  482.     /**
  483.      * @param array|null $array
  484.      * @return array|string[]
  485.      */
  486.     private function prepareEmptyArray(?array $array): array
  487.     {
  488.         if (null === $array || 0 >= sizeof($array)) {
  489.             $array = array("");
  490.         }
  492.         return $array;
  493.     }
  494. }